TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255544744|ref|XP_002513433.1| Selenoprotein O, putative
[Ricinus communis]
         (654 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp...   489   e-138

>dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete
              sequence
          Length = 902900

 Score =  489 bits (1259), Expect = e-138
 Identities = 287/598 (47%), Positives = 355/598 (59%), Gaps = 16/598 (2%)
 Frame = +2

Query: 73     PEAASTMSVVDSVTNDFKNQSLRDDDNNNKNNTTSKVKSSLDDLNWDHSFVRELPGDSRT 132
              PE A   S     ++D K   L        + +  ++ + LD+L     F   LP D  T
Sbjct: 838541 PETAMLGSGTGHGSSDGKGAPLPATTTTTTHQSDERLLT-LDELVLSAGFASRLPADPET 838717

Query: 133    DTIPRQVLHACFSKVFPSAEVENPQLVAWSESVA-VLLDLDLKEFERPDFALKFSGASTL 191
                  R V  A  S V PS     P L  WS+  A   LDL+++  ER   A  FSG + L
Sbjct: 838718 ANYVRVVRGAALSFVHPSPTWTEPVLAVWSDRCARACLDLEVRPSERDYAARVFSGLAML 838897

Query: 192    VGSLPYAQCYGGHQFGMWAGQLGDGRAITLGEILNSKSERWELQLKGAGKTPYSRFADGL 251
               GS PYAQ YGGHQFG+WAGQLGDGR I LGE  N   E W LQLKGAGKTP++RFADG 
Sbjct: 838898 PGSRPYAQRYGGHQFGVWAGQLGDGRVIVLGEYQNRCGETWTLQLKGAGKTPFARFADGR 839077

Query: 252    AVLRSSIREFLCSEAMHHLGIPTTRALCLVTTGKYVTRDMFYDGNPKEEPGAIVCRVAQS 311
              AVLRSS+REFL SEA+H LGIPT+RAL LV TG  V RDMFYDGNP+EEPGA+VCR+A S
Sbjct: 839078 AVLRSSVREFLASEALHALGIPTSRALSLVVTGDKVVRDMFYDGNPREEPGAVVCRLAPS 839257

Query: 312    FLRFGSFQIHASRGKEDFGIVRALADYAIRHHFP----HIDNMTKSESLSFSMGAEDDSI 367
              ++RFG+F++  +    +  ++R LAD  I HH+P    H  +  K  S   S  A ++  
Sbjct: 839258 WVRFGTFEL--ATDWNELELLRQLADDTIVHHYPALLAHERSHGKRTSADSSRSARNEE- 839428

Query: 368    VDLTSNKYAAWTVEVAERTASLIASWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFD 427
                     Y A  ++VAERTA+L+A WQ VGF HGVLNTDNMSILG+TIDYGPFGFLDA+ 
Sbjct: 839429 -SQNPMPYRALLLQVAERTAALVAGWQSVGFVHGVLNTDNMSILGITIDYGPFGFLDAYM 839605

Query: 428    PSYTPNTTDLPGRRYCFANQPDIGLWNIAQFTATLSEAQLINDKEANYAMERYGNKFMDE 487
              P YTPNTTDLPGRRYC+A QP I LWN+ Q           N  E     + Y  KF +E
Sbjct: 839606 PEYTPNTTDLPGRRYCYALQPTICLWNLLQLVRAFEPLTGTNLSEE--VSQTYETKFREE 839779

Query: 488    YQAIMTRKLGLPKYNKQ----LISKLLNNMAVDKVDYTNFFRLLSNIKADPNIPEEEL-L 542
                A +  KLG   +N      L+  L   M  D+ D+T  +R LS ++    + + +  L
Sbjct: 839780 MSARLRAKLGFQTWNSDADNGLVRDLYELMRQDRADFTRTWRALSWLEPVACLQKSDASL 839959

Query: 543    VPLKAAL---LDIGKERKEAWISWVQSYVQELAASDISD-DERKAQMDAVNPKYILRNYL 598
               PL   L   +    +R EAW  WVQ Y +   A D  D   R+ QM A +PKYILRNY+
Sbjct: 839960 EPLLRVLPEPVRKNPDRLEAWRLWVQRYAERTLAEDNFDGTARRKQMQAASPKYILRNYM 840139

Query: 599    CQTAIDAAE-QGDMGEVRRLLKLMERPFDEQPGMEK-YARLPPAWAYRPGVCMLSCSS 654
               Q AI+ AE + D  E+ RLLKL+E P+ EQP ME  Y R PP W+ R GVCM SCSS
Sbjct: 840140 AQVAIEKAENEQDFSEIERLLKLLEHPYAEQPEMEALYDREPPTWSQRLGVCMNSCSS 840313


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.318    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,688,596
Number of Sequences: 20
Number of extensions: 220643
Number of successful extensions: 1315
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1263
Number of HSP's gapped (non-prelim): 166
length of query: 654
length of database: 5,515,582
effective HSP length: 102
effective length of query: 552
effective length of database: 5,513,542
effective search space: 3043475184
effective search space used: 3043475184
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)